Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs12372980 chr15:82562498 G/A 8.97E-6 478 30.12 36.47 36.65 KM Plot
PRAD rs12380887 chr9:114644398 C/T 4.27E-5 491 30.97 29.95 30.33 KM Plot
PRAD rs12405970 chr1:6691312 G/A 0.000185 475 30.37 31.27 31.48 KM Plot
PRAD rs12412903 chr10:90567061 A/C 3.29E-7 494 31.23 30.2 21.35 KM Plot
PRAD rs12415827 chr10:90984032 A/G 8.89E-5 494 28.7 28.48 32.03 KM Plot
PRAD rs12416761 chr11:68200945 G/A 1.61E-7 494 29.63 33.6 24.58 KM Plot
PRAD rs12417014 chr11:68201007 C/T 1.61E-7 494 29.63 33.6 24.58 KM Plot
PRAD rs12417792 chr11:68199922 G/T 1.61E-7 494 24.58 33.48 29.8 KM Plot
PRAD rs12419626 chr11:102636715 A/C 0.000119 494 25.67 31 31.25 KM Plot
PRAD rs12419844 chr11:129980060 T/C 1.96E-6 494 30.93 31.3 22.8 KM Plot
PRAD rs12420396 chr11:129944389 G/A 1.17E-5 492 30.87 33.13 22.67 KM Plot
PRAD rs12422125 chr11:50619511 G/A 1.77E-8 483 31.33 28.05 24.27 KM Plot
PRAD rs12423209 chr12:52877912 G/A 4.87E-6 490 29.52 35.67 22.2 KM Plot
PRAD rs12425113 chr12:52855360 G/T 0.000153 490 29.32 36.48 22.93 KM Plot
PRAD rs12467440 chr2:232799675 G/A 9.58E-6 491 31.27 28.23 42.93 KM Plot